HL_4V8Q_016

3D structure

PDB id

4V8Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGGGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8Q_016 not in the Motif Atlas

Homologous match to HL_4WF9_016

Geometric discrepancy: 0.0748

The information below is about HL_4WF9_016

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

4V8Q|1|AA|C|487
4V8Q|1|AA|G|488
4V8Q|1|AA|G|489
4V8Q|1|AA|G|491
4V8Q|1|AA|A|492
4V8Q|1|AA|G|493

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AW

50S RIBOSOMAL PROTEIN L22