HL_4V8Q_017

3D structure

PDB id

4V8Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGCAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8Q_017 not in the Motif Atlas

Geometric match to HL_4LFB_019

Geometric discrepancy: 0.1371

The information below is about HL_4LFB_019

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

4V8Q|1|AA|C|543
4V8Q|1|AA|G|544
4V8Q|1|AA|C|545
4V8Q|1|AA|A|547
4V8Q|1|AA|A|548
4V8Q|1|AA|G|549

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AN

50S RIBOSOMAL PROTEIN L13

Chain AV

50S RIBOSOMAL PROTEIN L21