HL_4V8Q_020

3D structure

PDB id

4V8Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8Q_020 not in the Motif Atlas

Homologous match to HL_7RQB_020

Geometric discrepancy: 0.0886

The information below is about HL_7RQB_020

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_35490.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

299

Unit IDs

4V8Q|1|AA|G|629
4V8Q|1|AA|G|630
4V8Q|1|AA|A|631
4V8Q|1|AA|A|632
4V8Q|1|AA|A|633
4V8Q|1|AA|C|634

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain A8

50S RIBOSOMAL PROTEIN L35

Chain AP

50S RIBOSOMAL PROTEIN L15