HL_4V8Q_036

3D structure

PDB id

4V8Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CCAUGGACGAG

Length

11 nucleotides

Bulged bases

4V8Q|1|AA|U|1453, 4V8Q|1|AA|A|1460

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8Q_036 not in the Motif Atlas

Homologous match to HL_7A0S_036

Geometric discrepancy: 0.5066

The information below is about HL_7A0S_036

Detailed Annotation

Pseudoknot

Broad Annotation

No text annotation

Motif group

HL_93135.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

1

Unit IDs

4V8Q|1|AA|C|1450|||A
4V8Q|1|AA|C|1451
4V8Q|1|AA|A|1452
4V8Q|1|AA|U|1453
4V8Q|1|AA|G|1455
4V8Q|1|AA|G|1456
4V8Q|1|AA|A|1457
4V8Q|1|AA|C|1458
4V8Q|1|AA|G|1459
4V8Q|1|AA|A|1460
4V8Q|1|AA|G|1461

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AR

50S RIBOSOMAL PROTEIN L17