HL_4V8Q_040

3D structure

PDB id

4V8Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGACACAG

Length

8 nucleotides

Bulged bases

4V8Q|1|AA|A|1614, 4V8Q|1|AA|A|1616, 4V8Q|1|AA|A|1618

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8Q_040 not in the Motif Atlas

Homologous match to HL_7RQB_040

Geometric discrepancy: 0.0886

The information below is about HL_7RQB_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64430.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

13

Unit IDs

4V8Q|1|AA|C|1612
4V8Q|1|AA|G|1613
4V8Q|1|AA|A|1614
4V8Q|1|AA|C|1615
4V8Q|1|AA|A|1616
4V8Q|1|AA|C|1617
4V8Q|1|AA|A|1618
4V8Q|1|AA|G|1619

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain A7

50S RIBOSOMAL PROTEIN L34

Chain AW

50S RIBOSOMAL PROTEIN L22