HL_4V8Q_042

3D structure

PDB id

4V8Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

4V8Q|1|AA|U|1693

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8Q_042 not in the Motif Atlas

Homologous match to HL_5J7L_175

Geometric discrepancy: 0.0523

The information below is about HL_5J7L_175

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

4V8Q|1|AA|C|1691
4V8Q|1|AA|U|1692
4V8Q|1|AA|U|1693
4V8Q|1|AA|C|1694
4V8Q|1|AA|G|1695
4V8Q|1|AA|G|1696

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AD

50S RIBOSOMAL PROTEIN L2

Chain BA

Small subunit ribosomal RNA; SSU rRNA