HL_4V8Q_051

3D structure

PDB id

4V8Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GCCUCCGGGU

Length

10 nucleotides

Bulged bases

4V8Q|1|AA|C|2145

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8Q_051 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.3427

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.3

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

4V8Q|1|AA|G|2141
4V8Q|1|AA|C|2142
4V8Q|1|AA|C|2143
4V8Q|1|AA|U|2144
4V8Q|1|AA|C|2145
4V8Q|1|AA|C|2146
4V8Q|1|AA|G|2147
4V8Q|1|AA|G|2148
4V8Q|1|AA|G|2149
4V8Q|1|AA|U|2150

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AC

50S RIBOSOMAL PROTEIN L1

Chain BK

30S RIBOSOMAL PROTEIN S11