HL_4V8Q_056

3D structure

PDB id

4V8Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGCAAGGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8Q_056 not in the Motif Atlas

Homologous match to HL_7RQB_056

Geometric discrepancy: 0.1144

The information below is about HL_7RQB_056

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_12078.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

31

Unit IDs

4V8Q|1|AA|C|2324
4V8Q|1|AA|G|2325
4V8Q|1|AA|C|2326
4V8Q|1|AA|A|2327
4V8Q|1|AA|A|2328
4V8Q|1|AA|G|2329
4V8Q|1|AA|G|2330
4V8Q|1|AA|G|2331

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain A0

50S RIBOSOMAL PROTEIN L27

Chain A6

50S RIBOSOMAL PROTEIN L33

Chain AQ

50S RIBOSOMAL PROTEIN L16

Chain BV

Transfer RNA; tRNA