HL_4V8Q_059

3D structure

PDB id

4V8Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGUGUGGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8Q_059 not in the Motif Atlas

Homologous match to HL_7RQB_059

Geometric discrepancy: 0.0819

The information below is about HL_7RQB_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40210.2

Basepair signature

cWW-tSH-F

Number of instances in this motif group

12

Unit IDs

4V8Q|1|AA|C|2404
4V8Q|1|AA|G|2405
4V8Q|1|AA|U|2406
4V8Q|1|AA|G|2407
4V8Q|1|AA|U|2408
4V8Q|1|AA|G|2409
4V8Q|1|AA|G|2410
4V8Q|1|AA|A|2411
4V8Q|1|AA|A|2412
4V8Q|1|AA|G|2413

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain A1

50S RIBOSOMAL PROTEIN L28

Chain AP

50S RIBOSOMAL PROTEIN L15