HL_4V8Q_060
3D structure
- PDB id
- 4V8Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- CGUCCACAG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V8Q_060 not in the Motif Atlas
- Homologous match to HL_7RQB_060
- Geometric discrepancy: 0.1523
- The information below is about HL_7RQB_060
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_06192.2
- Basepair signature
- cWW-tSH-F-F
- Number of instances in this motif group
- 14
Unit IDs
4V8Q|1|AA|C|2471
4V8Q|1|AA|G|2472
4V8Q|1|AA|U|2473
4V8Q|1|AA|C|2474
4V8Q|1|AA|C|2475
4V8Q|1|AA|A|2476
4V8Q|1|AA|C|2477
4V8Q|1|AA|A|2478
4V8Q|1|AA|G|2479
Current chains
- Chain AA
- 23S ribosomal RNA
Nearby chains
- Chain A9
- 50S RIBOSOMAL PROTEIN L36
- Chain AQ
- 50S RIBOSOMAL PROTEIN L16
- Chain BY
- Transfer-messenger RNA; tmRNA; 10Sa RNA; SsrA
Coloring options: