HL_4V8Q_071

3D structure

PDB id

4V8Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGCGAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8Q_071 not in the Motif Atlas

Homologous match to HL_7RQB_071

Geometric discrepancy: 0.1985

The information below is about HL_7RQB_071

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_35490.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

299

Unit IDs

4V8Q|1|AB|G|86
4V8Q|1|AB|G|87
4V8Q|1|AB|C|88
4V8Q|1|AB|G|89
4V8Q|1|AB|A|90
4V8Q|1|AB|C|91

Current chains

Chain AB

5S ribosomal RNA

Nearby chains

Chain AA

Large subunit ribosomal RNA; LSU rRNA

Chain AQ

50S RIBOSOMAL PROTEIN L16

Chain AZ

50S RIBOSOMAL PROTEIN L25