HL_4V8Q_085

3D structure

PDB id

4V8Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GCUCAAC

Length

7 nucleotides

Bulged bases

4V8Q|1|BA|U|619

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8Q_085 not in the Motif Atlas

Homologous match to HL_4LFB_014

Geometric discrepancy: 0.1209

The information below is about HL_4LFB_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_10453.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

4V8Q|1|BA|G|617
4V8Q|1|BA|C|618
4V8Q|1|BA|U|619
4V8Q|1|BA|C|620
4V8Q|1|BA|A|621
4V8Q|1|BA|A|622
4V8Q|1|BA|C|623

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BD

30S RIBOSOMAL PROTEIN S4

Chain BP

30S RIBOSOMAL PROTEIN S16