HL_4V8Q_096

3D structure

PDB id

4V8Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CCAGCGGUUCGGCCGG

Length

16 nucleotides

Bulged bases

4V8Q|1|BA|U|1136, 4V8Q|1|BA|C|1137

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V8Q|1|BA|C|1128
4V8Q|1|BA|C|1129
4V8Q|1|BA|A|1130
4V8Q|1|BA|G|1131
4V8Q|1|BA|C|1132
4V8Q|1|BA|G|1133
4V8Q|1|BA|G|1134
4V8Q|1|BA|U|1135
4V8Q|1|BA|U|1136
4V8Q|1|BA|C|1137
4V8Q|1|BA|G|1138
4V8Q|1|BA|G|1139
4V8Q|1|BA|C|1140
4V8Q|1|BA|C|1141
4V8Q|1|BA|G|1142
4V8Q|1|BA|G|1143

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BI

30S RIBOSOMAL PROTEIN S9