HL_4V8Q_101

3D structure

PDB id

4V8Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUACGG

Length

6 nucleotides

Bulged bases

4V8Q|1|BA|C|1452

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8Q_101 not in the Motif Atlas

Homologous match to HL_5J7L_030

Geometric discrepancy: 0.3623

The information below is about HL_5J7L_030

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

4V8Q|1|BA|C|1445
4V8Q|1|BA|U|1446
4V8Q|1|BA|A|1447
4V8Q|1|BA|C|1452
4V8Q|1|BA|G|1456
4V8Q|1|BA|G|1457

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BT

30S RIBOSOMAL PROTEIN S20