HL_4V8Q_104

3D structure

PDB id

4V8Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GCUCAUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8Q_104 not in the Motif Atlas

Homologous match to HL_4TUE_034

Geometric discrepancy: 0.1092

The information below is about HL_4TUE_034

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_06059.6

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

51

Unit IDs

4V8Q|1|BV|G|32
4V8Q|1|BV|C|33
4V8Q|1|BV|U|34
4V8Q|1|BV|C|35
4V8Q|1|BV|A|36
4V8Q|1|BV|U|37
4V8Q|1|BV|A|38
4V8Q|1|BV|A|39
4V8Q|1|BV|C|40

Current chains

Chain BV

E-SITE or P-SITE TRNA FMET

Nearby chains

Chain BA

Small subunit ribosomal RNA; SSU rRNA

Chain BI

30S RIBOSOMAL PROTEIN S9

Chain BM

30S RIBOSOMAL PROTEIN S13

Chain BX

MRNA