HL_4V8Q_107
3D structure
- PDB id
- 4V8Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GGGCUCAUAACCC
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V8Q_107 not in the Motif Atlas
- Geometric match to HL_4WFL_001
- Geometric discrepancy: 0.3406
- The information below is about HL_4WFL_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_05304.3
- Basepair signature
- cWW-cWW-F-F-tSH-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
4V8Q|1|BW|G|30
4V8Q|1|BW|G|31
4V8Q|1|BW|G|32
4V8Q|1|BW|C|33
4V8Q|1|BW|U|34
4V8Q|1|BW|C|35
4V8Q|1|BW|A|36
4V8Q|1|BW|U|37
4V8Q|1|BW|A|38
4V8Q|1|BW|A|39
4V8Q|1|BW|C|40
4V8Q|1|BW|C|41
4V8Q|1|BW|C|42
Current chains
- Chain BW
- E-SITE or P-SITE TRNA FMET
Nearby chains
- Chain BA
- Small subunit ribosomal RNA; SSU rRNA
- Chain BG
- 30S RIBOSOMAL PROTEIN S7
- Chain BK
- 30S RIBOSOMAL PROTEIN S11
- Chain BV
- Transfer RNA; tRNA
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