HL_4V8Q_108
3D structure
- PDB id
- 4V8Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GUUCAAAUC
- Length
- 9 nucleotides
- Bulged bases
- 4V8Q|1|BW|C|57
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V8Q_108 not in the Motif Atlas
- Homologous match to HL_5X6B_003
- Geometric discrepancy: 0.2645
- The information below is about HL_5X6B_003
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_28252.7
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 139
Unit IDs
4V8Q|1|BW|G|54
4V8Q|1|BW|U|55
4V8Q|1|BW|U|56
4V8Q|1|BW|C|57
4V8Q|1|BW|A|58
4V8Q|1|BW|A|59
4V8Q|1|BW|A|60
4V8Q|1|BW|U|61
4V8Q|1|BW|C|62
Current chains
- Chain BW
- E-SITE or P-SITE TRNA FMET
Nearby chains
- Chain AA
- Large subunit ribosomal RNA; LSU rRNA
- Chain AC
- 50S RIBOSOMAL PROTEIN L1
Coloring options: