HL_4V8Q_110
3D structure
- PDB id
- 4V8Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GUUCGACUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_43993.1
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 141
Unit IDs
4V8Q|1|BY|G|66
4V8Q|1|BY|U|67
4V8Q|1|BY|U|68
4V8Q|1|BY|C|69
4V8Q|1|BY|G|70
4V8Q|1|BY|A|71
4V8Q|1|BY|C|72
4V8Q|1|BY|U|73
4V8Q|1|BY|C|74
Current chains
- Chain BY
- TMRNA DELA
Nearby chains
- Chain AA
- Large subunit ribosomal RNA; LSU rRNA
- Chain B2
- SMALL PROTEIN B SMPB
- Chain BZ
- ELONGATION FACTOR TU
Coloring options: