HL_4V8Q_111

3D structure

PDB id

4V8Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UUCGUGGAG

Length

9 nucleotides

Bulged bases

4V8Q|1|AA|G|386, 4V8Q|1|AA|G|389

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V8Q|1|AA|U|383
4V8Q|1|AA|U|384
4V8Q|1|AA|C|385
4V8Q|1|AA|G|386
4V8Q|1|AA|U|387
4V8Q|1|AA|G|388
4V8Q|1|AA|G|389
4V8Q|1|AA|A|390
4V8Q|1|AA|G|391

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain A1

50S RIBOSOMAL PROTEIN L28

Chain AP

50S RIBOSOMAL PROTEIN L15