HL_4V8Q_112
3D structure
- PDB id
- 4V8Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GCUUAGAAGCAGC
- Length
- 13 nucleotides
- Bulged bases
- 4V8Q|1|AA|U|1066, 4V8Q|1|AA|A|1070
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V8Q_112 not in the Motif Atlas
- Geometric match to HL_1KH6_003
- Geometric discrepancy: 0.3931
- The information below is about HL_1KH6_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_27483.1
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 2
Unit IDs
4V8Q|1|AA|G|1063
4V8Q|1|AA|C|1064
4V8Q|1|AA|U|1065
4V8Q|1|AA|U|1066
4V8Q|1|AA|A|1067
4V8Q|1|AA|G|1068
4V8Q|1|AA|A|1069
4V8Q|1|AA|A|1070
4V8Q|1|AA|G|1071
4V8Q|1|AA|C|1072
4V8Q|1|AA|A|1073
4V8Q|1|AA|G|1074
4V8Q|1|AA|C|1075
Current chains
- Chain AA
- 23S ribosomal RNA
Nearby chains
- Chain AK
- 50S RIBOSOMAL PROTEIN L11
- Chain AQ
- 50S RIBOSOMAL PROTEIN L16
- Chain AZ
- 50S RIBOSOMAL PROTEIN L25
- Chain BY
- Transfer-messenger RNA; tmRNA; 10Sa RNA; SsrA
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