HL_4V8Q_113

3D structure

PDB id

4V8Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGAUGAC

Length

7 nucleotides

Bulged bases

4V8Q|1|AA|A|1174, 4V8Q|1|AA|A|1177

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8Q_113 not in the Motif Atlas

Geometric match to HL_4KR9_003

Geometric discrepancy: 0.2403

The information below is about HL_4KR9_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_70782.2

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

4V8Q|1|AA|G|1171
4V8Q|1|AA|G|1173
4V8Q|1|AA|A|1174
4V8Q|1|AA|U|1175
4V8Q|1|AA|G|1176
4V8Q|1|AA|A|1177
4V8Q|1|AA|C|1178

Current chains

Chain AA

23S ribosomal RNA

Nearby chains