HL_4V8U_117

3D structure

PDB id

4V8U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of 70S Ribosome with Both Cognate tRNAs in the E and P Sites Representing an Authentic Elongation Complex.

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

CACUGAGACACGGG

Length

14 nucleotides

Bulged bases

4V8U|1|CA|C|330, 4V8U|1|CA|G|331

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8U_117 not in the Motif Atlas

Homologous match to HL_4LFB_008

Geometric discrepancy: 0.1078

The information below is about HL_4LFB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39665.1

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

4V8U|1|CA|C|320
4V8U|1|CA|A|321
4V8U|1|CA|C|322
4V8U|1|CA|U|323
4V8U|1|CA|G|324
4V8U|1|CA|A|325
4V8U|1|CA|G|326
4V8U|1|CA|A|327
4V8U|1|CA|C|328
4V8U|1|CA|A|329
4V8U|1|CA|C|330
4V8U|1|CA|G|331
4V8U|1|CA|G|332
4V8U|1|CA|G|333

Current chains

Chain CA

16S RIBOSOMAL RNA

Nearby chains

Chain CP

30S RIBOSOMAL PROTEIN S16

Chain CT

30S RIBOSOMAL PROTEIN S20