HL_4V8U_200

3D structure

PDB id

4V8U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of 70S Ribosome with Both Cognate tRNAs in the E and P Sites Representing an Authentic Elongation Complex.

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

4V8U|1|DA|G|2250

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8U_200 not in the Motif Atlas

Homologous match to HL_7A0S_052

Geometric discrepancy: 0.0967

The information below is about HL_7A0S_052

Detailed Annotation

LSU P loop

Broad Annotation

LSU P loop

Motif group

HL_11974.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

19

Unit IDs

4V8U|1|DA|C|2248
4V8U|1|DA|U|2249
4V8U|1|DA|G|2250
4V8U|1|DA|G|2251
4V8U|1|DA|G|2252
4V8U|1|DA|G|2253
4V8U|1|DA|C|2254
4V8U|1|DA|G|2255
4V8U|1|DA|G|2256

Current chains

Chain DA

23S RIBOSOMAL RNA

Nearby chains

Chain CV

Transfer RNA; tRNA

Chain D0

50S RIBOSOMAL PROTEIN L27

Chain DQ

50S RIBOSOMAL PROTEIN L16