HL_4V8U_233

3D structure

PDB id

4V8U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of 70S Ribosome with Both Cognate tRNAs in the E and P Sites Representing an Authentic Elongation Complex.

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

GGUCUCC

Length

7 nucleotides

Bulged bases

4V8U|1|CA|U|839, 4V8U|1|CA|U|841

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8U_233 not in the Motif Atlas

Geometric match to HL_1KH6_003

Geometric discrepancy: 0.3266

The information below is about HL_1KH6_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.2

Basepair signature

cWW-cWW

Number of instances in this motif group

3

Unit IDs

4V8U|1|CA|G|837
4V8U|1|CA|G|838
4V8U|1|CA|U|839
4V8U|1|CA|C|840
4V8U|1|CA|U|841
4V8U|1|CA|C|848
4V8U|1|CA|C|849

Current chains

Chain CA

16S RIBOSOMAL RNA

Nearby chains

Chain CB

30S RIBOSOMAL PROTEIN S2

Chain CR

30S RIBOSOMAL PROTEIN S18