HL_4V8X_074

3D structure

PDB id

4V8X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Thermus thermophilus ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

GGCAAAUCC

Length

9 nucleotides

Bulged bases

4V8X|1|BA|C|1493, 4V8X|1|BA|U|1497

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8X_074 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.3851

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.3

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

4V8X|1|BA|G|1491
4V8X|1|BA|G|1492
4V8X|1|BA|C|1493
4V8X|1|BA|A|1494
4V8X|1|BA|A|1495
4V8X|1|BA|A|1496
4V8X|1|BA|U|1497
4V8X|1|BA|C|1498
4V8X|1|BA|C|1499

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BD

50S RIBOSOMAL PROTEIN L2