HL_4V8X_188

3D structure

PDB id

4V8X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Thermus thermophilus ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

GUGAUGAGC

Length

9 nucleotides

Bulged bases

4V8X|1|DA|U|1739

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8X_188 not in the Motif Atlas

Homologous match to HL_5J7L_214

Geometric discrepancy: 0.5774

The information below is about HL_5J7L_214

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_08100.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

4V8X|1|DA|G|1719
4V8X|1|DA|U|1720
4V8X|1|DA|G|1721
4V8X|1|DA|A|1722
4V8X|1|DA|U|1739
4V8X|1|DA|G|1740
4V8X|1|DA|A|1741
4V8X|1|DA|G|1742
4V8X|1|DA|C|1743

Current chains

Chain DA

23S ribosomal RNA

Nearby chains