HL_4V8X_212

3D structure

PDB id

4V8X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Thermus thermophilus ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

GGCGUCAAGCC

Length

11 nucleotides

Bulged bases

4V8X|1|DA|U|2796, 4V8X|1|DA|A|2801, 4V8X|1|DA|G|2802

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8X_212 not in the Motif Atlas

Geometric match to HL_4V9K_033

Geometric discrepancy: 0.3616

The information below is about HL_4V9K_033

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_48417.6

Basepair signature

cWW-F-F

Number of instances in this motif group

22

Unit IDs

4V8X|1|DA|G|2792
4V8X|1|DA|G|2793
4V8X|1|DA|C|2794
4V8X|1|DA|G|2795
4V8X|1|DA|U|2796
4V8X|1|DA|C|2799
4V8X|1|DA|A|2801
4V8X|1|DA|A|2801|||A
4V8X|1|DA|G|2802
4V8X|1|DA|C|2803
4V8X|1|DA|C|2804

Current chains

Chain DA

23S ribosomal RNA

Nearby chains