HL_4V8X_220

3D structure

PDB id

4V8X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Thermus thermophilus ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

CGGCAACG

Length

8 nucleotides

Bulged bases

4V8X|1|AA|C|1267

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8X_220 not in the Motif Atlas

Geometric match to HL_3RG5_006

Geometric discrepancy: 0.3238

The information below is about HL_3RG5_006

Detailed Annotation

tRNA anticodon loop

Broad Annotation

tRNA anticodon loop

Motif group

HL_04259.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

4V8X|1|AA|C|1264
4V8X|1|AA|G|1265
4V8X|1|AA|G|1266
4V8X|1|AA|C|1267
4V8X|1|AA|A|1268
4V8X|1|AA|A|1269
4V8X|1|AA|C|1270
4V8X|1|AA|G|1271

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AM

30S RIBOSOMAL PROTEIN S13

Chain AS

30S RIBOSOMAL PROTEIN S19

Chain AU

30S RIBOSOMAL PROTEIN THX