HL_4V8X_231

3D structure

PDB id

4V8X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Thermus thermophilus ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

CGAAGACAGCCAGUCGAG

Length

18 nucleotides

Bulged bases

4V8X|1|DA|A|1046, 4V8X|1|DA|C|1049, 4V8X|1|DA|C|1052, 4V8X|1|DA|C|1053, 4V8X|1|DA|A|1111

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V8X|1|DA|C|1043
4V8X|1|DA|G|1044
4V8X|1|DA|A|1045
4V8X|1|DA|A|1046
4V8X|1|DA|G|1047
4V8X|1|DA|A|1048
4V8X|1|DA|C|1049
4V8X|1|DA|A|1050
4V8X|1|DA|G|1051
4V8X|1|DA|C|1052
4V8X|1|DA|C|1053
4V8X|1|DA|A|1106
4V8X|1|DA|G|1107
4V8X|1|DA|U|1108
4V8X|1|DA|C|1109
4V8X|1|DA|G|1110
4V8X|1|DA|A|1111
4V8X|1|DA|G|1112

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain DH

50S RIBOSOMAL PROTEIN L6

Chain DJ

50S RIBOSOMAL PROTEIN L10