HL_4V8Y_011
3D structure
- PDB id
- 4V8Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.3 Å
Loop
- Sequence
- CCAAGG
- Length
- 6 nucleotides
- Bulged bases
- 4V8Y|1|B2|A|416
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V8Y_011 not in the Motif Atlas
- Homologous match to HL_4V88_196
- Geometric discrepancy: 0.1221
- The information below is about HL_4V88_196
- Detailed Annotation
- UNCG
- Broad Annotation
- No text annotation
- Motif group
- HL_34617.1
- Basepair signature
- cWW-tSW-F
- Number of instances in this motif group
- 57
Unit IDs
4V8Y|1|B2|C|414
4V8Y|1|B2|C|415
4V8Y|1|B2|A|416
4V8Y|1|B2|A|417
4V8Y|1|B2|G|418
4V8Y|1|B2|G|419
Current chains
- Chain B2
- 18S RIBOSOMAL RNA
Nearby chains
- Chain AG
- 40S RIBOSOMAL PROTEIN S6-A
- Chain AY
- 40S RIBOSOMAL PROTEIN S24-A
- Chain BV
- 60S RIBOSOMAL PROTEIN L23-A
- Chain CP
- EUKARYOTIC TRANSLATION INITIATION FACTOR 5B
Coloring options: