HL_4V8Y_016

3D structure

PDB id

4V8Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

GCUAACCUUGAGUCCUUGUGGCUCUUGGCGAAC

Length

33 nucleotides

Bulged bases

4V8Y|1|B2|U|718, 4V8Y|1|B2|U|719, 4V8Y|1|B2|U|721

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V8Y|1|B2|G|703
4V8Y|1|B2|C|704
4V8Y|1|B2|U|705
4V8Y|1|B2|A|706
4V8Y|1|B2|A|707
4V8Y|1|B2|C|708
4V8Y|1|B2|C|709
4V8Y|1|B2|U|710
4V8Y|1|B2|U|711
4V8Y|1|B2|G|712
4V8Y|1|B2|A|713
4V8Y|1|B2|G|714
4V8Y|1|B2|U|715
4V8Y|1|B2|C|716
4V8Y|1|B2|C|717
4V8Y|1|B2|U|718
4V8Y|1|B2|U|719
4V8Y|1|B2|G|720
4V8Y|1|B2|U|721
4V8Y|1|B2|G|722
4V8Y|1|B2|G|723
4V8Y|1|B2|C|724
4V8Y|1|B2|U|725
4V8Y|1|B2|C|726
4V8Y|1|B2|U|727
4V8Y|1|B2|U|728
4V8Y|1|B2|G|729
4V8Y|1|B2|G|730
4V8Y|1|B2|C|731
4V8Y|1|B2|G|732
4V8Y|1|B2|A|733
4V8Y|1|B2|A|734
4V8Y|1|B2|C|735

Current chains

Chain B2

18S RIBOSOMAL RNA

Nearby chains

Chain AE

40S RIBOSOMAL PROTEIN S4-A