HL_4V8Y_017

3D structure

PDB id

4V8Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

UGUUCAAAG

Length

9 nucleotides

Bulged bases

4V8Y|1|B2|G|765

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8Y_017 not in the Motif Atlas

Homologous match to HL_4V88_203

Geometric discrepancy: 0.0762

The information below is about HL_4V88_203

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47383.2

Basepair signature

cWW-F-F-cWW-F-F

Number of instances in this motif group

11

Unit IDs

4V8Y|1|B2|U|764
4V8Y|1|B2|G|765
4V8Y|1|B2|U|766
4V8Y|1|B2|U|767
4V8Y|1|B2|C|768
4V8Y|1|B2|A|769
4V8Y|1|B2|A|770
4V8Y|1|B2|A|771
4V8Y|1|B2|G|772

Current chains

Chain B2

18S RIBOSOMAL RNA

Nearby chains

Chain AE

40S RIBOSOMAL PROTEIN S4-A

Chain AJ

40S RIBOSOMAL PROTEIN S9-A

Chain AY

40S RIBOSOMAL PROTEIN S24-A