HL_4V8Y_039
3D structure
- PDB id
- 4V8Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.3 Å
Loop
- Sequence
- CGGCGAG
- Length
- 7 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V8Y_039 not in the Motif Atlas
- Homologous match to HL_5TBW_003
- Geometric discrepancy: 0.0685
- The information below is about HL_5TBW_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_67216.9
- Basepair signature
- cWW-cWW-F-tSH
- Number of instances in this motif group
- 9
Unit IDs
4V8Y|1|B5|C|90
4V8Y|1|B5|G|91
4V8Y|1|B5|G|92
4V8Y|1|B5|C|93
4V8Y|1|B5|G|94
4V8Y|1|B5|A|95
4V8Y|1|B5|G|96
Current chains
- Chain B5
- 25S RIBOSOMAL RNA
Nearby chains
- Chain BL
- 60S RIBOSOMAL PROTEIN L13-A
- Chain BQ
- 60S RIBOSOMAL PROTEIN L18-A
- Chain Ba
- 60S RIBOSOMAL PROTEIN L28
- Chain Bo
- 60S RIBOSOMAL PROTEIN L42-A
- Chain CW
- Transfer RNA; tRNA
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