HL_4V8Y_041

3D structure

PDB id

4V8Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

UUGGAACA

Length

8 nucleotides

Bulged bases

4V8Y|1|B5|C|200

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8Y_041 not in the Motif Atlas

Homologous match to HL_5TBW_005

Geometric discrepancy: 0.06

The information below is about HL_5TBW_005

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_58705.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

4V8Y|1|B5|U|194
4V8Y|1|B5|U|195
4V8Y|1|B5|G|196
4V8Y|1|B5|G|197
4V8Y|1|B5|A|198
4V8Y|1|B5|A|199
4V8Y|1|B5|C|200
4V8Y|1|B5|A|201

Current chains

Chain B5

25S RIBOSOMAL RNA

Nearby chains

Chain BC

60S RIBOSOMAL PROTEIN L4-A

Chain BY

60S RIBOSOMAL PROTEIN L26-A

Chain Be

60S RIBOSOMAL PROTEIN L32