HL_4V8Y_046

3D structure

PDB id

4V8Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

AGUGAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8Y_046 not in the Motif Atlas

Homologous match to HL_5TBW_010

Geometric discrepancy: 0.0682

The information below is about HL_5TBW_010

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

4V8Y|1|B5|A|357
4V8Y|1|B5|G|358
4V8Y|1|B5|U|359
4V8Y|1|B5|G|360
4V8Y|1|B5|A|361
4V8Y|1|B5|U|362

Current chains

Chain B5

25S RIBOSOMAL RNA

Nearby chains

Chain BC

60S RIBOSOMAL PROTEIN L4-A

Chain Bj

60S RIBOSOMAL PROTEIN L37-A

Chain Bl

60S RIBOSOMAL PROTEIN L39