HL_4V8Y_088

3D structure

PDB id

4V8Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

GUGAAGAGACGUUUCUUUAC

Length

20 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V8Y|1|B5|G|2435
4V8Y|1|B5|U|2436
4V8Y|1|B5|G|2437
4V8Y|1|B5|A|2438
4V8Y|1|B5|A|2439
4V8Y|1|B5|G|2440
4V8Y|1|B5|A|2441
4V8Y|1|B5|G|2442
4V8Y|1|B5|A|2443
4V8Y|1|B5|C|2444
4V8Y|1|B5|G|2503
4V8Y|1|B5|U|2504
4V8Y|1|B5|U|2505
4V8Y|1|B5|U|2506
4V8Y|1|B5|C|2507
4V8Y|1|B5|U|2508
4V8Y|1|B5|U|2509
4V8Y|1|B5|U|2510
4V8Y|1|B5|A|2511
4V8Y|1|B5|C|2512

Current chains

Chain B5

25S RIBOSOMAL RNA

Nearby chains

Chain AB

40S RIBOSOMAL PROTEIN S1-A

Chain BG

60S RIBOSOMAL PROTEIN L8-A

Chain BN

60S RIBOSOMAL PROTEIN L15-A

Chain Bi

60S RIBOSOMAL PROTEIN L36-A

Chain CN

Large subunit ribosomal RNA; LSU rRNA