HL_4V8Y_107

3D structure

PDB id

4V8Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

GUAUACGAC

Length

9 nucleotides

Bulged bases

4V8Y|1|B5|U|3304

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8Y_107 not in the Motif Atlas

Homologous match to HL_8C3A_071

Geometric discrepancy: 0.0916

The information below is about HL_8C3A_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.4

Basepair signature

cWW-cSW-F-F-F-cWW

Number of instances in this motif group

9

Unit IDs

4V8Y|1|B5|G|3303
4V8Y|1|B5|U|3304
4V8Y|1|B5|A|3305
4V8Y|1|B5|U|3306
4V8Y|1|B5|A|3307
4V8Y|1|B5|C|3308
4V8Y|1|B5|G|3309
4V8Y|1|B5|A|3310
4V8Y|1|B5|C|3311

Current chains

Chain B5

25S RIBOSOMAL RNA

Nearby chains

Chain BB

60S RIBOSOMAL PROTEIN L3

Chain BP

60S RIBOSOMAL PROTEIN L17-A