HL_4V8Y_111
3D structure
- PDB id
- 4V8Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.3 Å
Loop
- Sequence
- UGAAUUGCAGAAUUCCGUGAA
- Length
- 21 nucleotides
- Bulged bases
- 4V8Y|1|B8|C|84, 4V8Y|1|B8|U|86
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V8Y_111 not in the Motif Atlas
- Homologous match to HL_8P9A_187
- Geometric discrepancy: 0.253
- The information below is about HL_8P9A_187
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_68571.1
- Basepair signature
- cWW-tSH-tHS-F-F-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
4V8Y|1|B8|U|69
4V8Y|1|B8|G|70
4V8Y|1|B8|A|71
4V8Y|1|B8|A|72
4V8Y|1|B8|U|73
4V8Y|1|B8|U|74
4V8Y|1|B8|G|75
4V8Y|1|B8|C|76
4V8Y|1|B8|A|77
4V8Y|1|B8|G|78
4V8Y|1|B8|A|79
4V8Y|1|B8|A|80
4V8Y|1|B8|U|81
4V8Y|1|B8|U|82
4V8Y|1|B8|C|83
4V8Y|1|B8|C|84
4V8Y|1|B8|G|85
4V8Y|1|B8|U|86
4V8Y|1|B8|G|87
4V8Y|1|B8|A|88
4V8Y|1|B8|A|89
Current chains
- Chain B8
- 5.8S RIBOSOMAL RNA
Nearby chains
- Chain B5
- Large subunit ribosomal RNA; LSU rRNA
- Chain BY
- 60S RIBOSOMAL PROTEIN L26-A
- Chain Bh
- 60S RIBOSOMAL PROTEIN L35-B
- Chain Bj
- 60S RIBOSOMAL PROTEIN L37-A
- Chain Bl
- 60S RIBOSOMAL PROTEIN L39
Coloring options: