HL_4V8Y_117

3D structure

PDB id

4V8Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

GUUCGAUUC

Length

9 nucleotides

Bulged bases

4V8Y|1|CW|C|56, 4V8Y|1|CW|G|57

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8Y_117 not in the Motif Atlas

Homologous match to HL_1QTQ_003

Geometric discrepancy: 0.2523

The information below is about HL_1QTQ_003

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.3

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

135

Unit IDs

4V8Y|1|CW|G|53
4V8Y|1|CW|U|54
4V8Y|1|CW|U|55
4V8Y|1|CW|C|56
4V8Y|1|CW|G|57
4V8Y|1|CW|A|58
4V8Y|1|CW|U|59
4V8Y|1|CW|U|60
4V8Y|1|CW|C|61

Current chains

Chain CW

EUKARYOTIC RIBOSOMAL P_E TRNA

Nearby chains

Chain By

50S RIBOSOMAL PROTEIN L1

Chain CL

50S RIBOSOMAL PROTEIN L1

Chain CN

Large subunit ribosomal RNA; LSU rRNA