HL_4V8Y_119

3D structure

PDB id

4V8Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

GGGCCCAUUCGGGUCU

Length

16 nucleotides

Bulged bases

4V8Y|1|B2|U|493, 4V8Y|1|B2|U|494, 4V8Y|1|B2|C|495

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V8Y|1|B2|G|486
4V8Y|1|B2|G|487
4V8Y|1|B2|G|488
4V8Y|1|B2|C|489
4V8Y|1|B2|C|490
4V8Y|1|B2|C|491
4V8Y|1|B2|A|492
4V8Y|1|B2|U|493
4V8Y|1|B2|U|494
4V8Y|1|B2|C|495
4V8Y|1|B2|G|496
4V8Y|1|B2|G|497
4V8Y|1|B2|G|498
4V8Y|1|B2|U|499
4V8Y|1|B2|C|500
4V8Y|1|B2|U|501

Current chains

Chain B2

18S RIBOSOMAL RNA

Nearby chains

Chain A4

40S RIBOSOMAL PROTEIN S30-A

Chain AJ

40S RIBOSOMAL PROTEIN S9-A