HL_4V8Y_122

3D structure

PDB id

4V8Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

UUAGAGANNNNNNNNNNNNNNUCUCAGA

Length

28 nucleotides

Bulged bases

4V8Y|1|B2|N|1694, 4V8Y|1|B2|N|1695, 4V8Y|1|B2|N|1696, 4V8Y|1|B2|N|1697, 4V8Y|1|B2|N|1698, 4V8Y|1|B2|N|1699, 4V8Y|1|B2|N|1700, 4V8Y|1|B2|N|1701, 4V8Y|1|B2|N|1702, 4V8Y|1|B2|N|1703, 4V8Y|1|B2|N|1704, 4V8Y|1|B2|N|1705, 4V8Y|1|B2|N|1706, 4V8Y|1|B2|N|1707, 4V8Y|1|B2|U|1708

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V8Y|1|B2|U|1687
4V8Y|1|B2|U|1688
4V8Y|1|B2|A|1689
4V8Y|1|B2|G|1690
4V8Y|1|B2|A|1691
4V8Y|1|B2|G|1692
4V8Y|1|B2|A|1693
4V8Y|1|B2|N|1694
4V8Y|1|B2|N|1695
4V8Y|1|B2|N|1696
4V8Y|1|B2|N|1697
4V8Y|1|B2|N|1698
4V8Y|1|B2|N|1699
4V8Y|1|B2|N|1700
4V8Y|1|B2|N|1701
4V8Y|1|B2|N|1702
4V8Y|1|B2|N|1703
4V8Y|1|B2|N|1704
4V8Y|1|B2|N|1705
4V8Y|1|B2|N|1706
4V8Y|1|B2|N|1707
4V8Y|1|B2|U|1708
4V8Y|1|B2|C|1709
4V8Y|1|B2|U|1710
4V8Y|1|B2|C|1711
4V8Y|1|B2|A|1712
4V8Y|1|B2|G|1713
4V8Y|1|B2|A|1714

Current chains

Chain B2

18S RIBOSOMAL RNA

Nearby chains

Chain AG

40S RIBOSOMAL PROTEIN S6-A

Chain BW

60S RIBOSOMAL PROTEIN L24-A