HL_4V8Y_125
3D structure
- PDB id
- 4V8Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.3 Å
Loop
- Sequence
- UUCCCGUCCGAUCA
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V8Y_125 not in the Motif Atlas
- Homologous match to HL_8P9A_183
- Geometric discrepancy: 0.0629
- The information below is about HL_8P9A_183
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_01182.1
- Basepair signature
- cWW-cWS-F-tSW-F-tSH-tSH-cWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
4V8Y|1|B7|U|32
4V8Y|1|B7|U|33
4V8Y|1|B7|C|34
4V8Y|1|B7|C|35
4V8Y|1|B7|C|36
4V8Y|1|B7|G|37
4V8Y|1|B7|U|38
4V8Y|1|B7|C|39
4V8Y|1|B7|C|40
4V8Y|1|B7|G|41
4V8Y|1|B7|A|42
4V8Y|1|B7|U|43
4V8Y|1|B7|C|44
4V8Y|1|B7|A|45
Current chains
- Chain B7
- 5S RIBOSOMAL RNA
Nearby chains
- Chain A7
- SUPPRESSOR PROTEIN STM1
- Chain B5
- Large subunit ribosomal RNA; LSU rRNA
- Chain BD
- 60S RIBOSOMAL PROTEIN L5
- Chain BJ
- 60S RIBOSOMAL PROTEIN L11-A
Coloring options: