3D structure

PDB id
4V90 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Thermus thermophilus Ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
2.95 Å

Loop

Sequence
CAGCCGGUAG
Length
10 nucleotides
Bulged bases
4V90|1|AV|C|16, 4V90|1|AV|C|17, 4V90|1|AV|G|18, 4V90|1|AV|G|19, 4V90|1|AV|U|20
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_20811.2
Basepair signature
cWW-cWS-F
Number of instances in this motif group
17

Unit IDs

4V90|1|AV|C|13
4V90|1|AV|A|14
4V90|1|AV|G|15
4V90|1|AV|C|16
4V90|1|AV|C|17
4V90|1|AV|G|18
4V90|1|AV|G|19
4V90|1|AV|U|20
4V90|1|AV|A|21
4V90|1|AV|G|22

Current chains

Chain AV
RNA (77-MER)

Nearby chains

Chain BA
Large subunit ribosomal RNA; LSU rRNA
Chain BC
RIBOSOMAL PROTEIN L1

Coloring options:

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