HL_4V90_033

3D structure

PDB id

4V90 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

AUUGAAAAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_53597.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

31

Unit IDs

4V90|1|AV|A|31
4V90|1|AV|U|32
4V90|1|AV|U|33
4V90|1|AV|G|34
4V90|1|AV|A|35
4V90|1|AV|A|36
4V90|1|AV|A|37
4V90|1|AV|A|38
4V90|1|AV|U|39

Current chains

Chain AV

RNA (77-MER)

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain AI

30S RIBOSOMAL PROTEIN S9

Chain AS

30S RIBOSOMAL PROTEIN S19

Chain AX

5'-R(*UP*AP*AP*AP*AP*AP*UP*GP*UP)-3'

Chain AY

ELONGATION FACTOR G