HL_4V90_051

3D structure

PDB id

4V90 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

CGCAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V90_051 not in the Motif Atlas

Geometric match to HL_3IGI_006

Geometric discrepancy: 0.1529

The information below is about HL_3IGI_006

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

4V90|1|BA|C|543
4V90|1|BA|G|544
4V90|1|BA|C|545
4V90|1|BA|A|547
4V90|1|BA|A|548
4V90|1|BA|G|549

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains

Chain BV

50S RIBOSOMAL PROTEIN L21