HL_4V90_055

3D structure

PDB id

4V90 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

CGAACAG

Length

7 nucleotides

Bulged bases

4V90|1|BA|C|645

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V90_055 not in the Motif Atlas

Homologous match to HL_7RQB_021

Geometric discrepancy: 0.2343

The information below is about HL_7RQB_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_35490.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

299

Unit IDs

4V90|1|BA|C|641
4V90|1|BA|G|642
4V90|1|BA|A|643
4V90|1|BA|A|644
4V90|1|BA|C|645
4V90|1|BA|A|646
4V90|1|BA|G|647

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains

Chain B6

50S RIBOSOMAL PROTEIN L33

Chain B8

50S RIBOSOMAL PROTEIN L35

Chain BP

50S RIBOSOMAL PROTEIN L15