HL_4V90_065

3D structure

PDB id

4V90 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

GGGAUGACC

Length

9 nucleotides

Bulged bases

4V90|1|BA|G|1173, 4V90|1|BA|U|1175, 4V90|1|BA|A|1177

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V90_065 not in the Motif Atlas

Geometric match to HL_1WZ2_007

Geometric discrepancy: 0.2346

The information below is about HL_1WZ2_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

4V90|1|BA|G|1170
4V90|1|BA|G|1171
4V90|1|BA|G|1173
4V90|1|BA|A|1174
4V90|1|BA|U|1175
4V90|1|BA|G|1176
4V90|1|BA|A|1177
4V90|1|BA|C|1178
4V90|1|BA|C|1179

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains

Chain BV

50S RIBOSOMAL PROTEIN L21