HL_4V90_087

3D structure

PDB id

4V90 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

CGGAUG

Length

6 nucleotides

Bulged bases

4V90|1|BA|U|2218

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V90_087 not in the Motif Atlas

Homologous match to HL_9DFE_050

Geometric discrepancy: 0.2008

The information below is about HL_9DFE_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_32346.4

Basepair signature

cWW-F

Number of instances in this motif group

9

Unit IDs

4V90|1|BA|C|2205
4V90|1|BA|G|2206
4V90|1|BA|G|2207
4V90|1|BA|A|2208
4V90|1|BA|U|2218
4V90|1|BA|G|2219

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains

Chain B1

50S RIBOSOMAL PROTEIN L28

Chain BD

50S RIBOSOMAL PROTEIN L2