HL_4V90_113

3D structure

PDB id

4V90 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

GCUGAAAGCAUCUAAGC

Length

17 nucleotides

Bulged bases

4V90|1|BA|G|2751

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V90_113 not in the Motif Atlas

Homologous match to HL_7A0S_074

Geometric discrepancy: 0.1879

The information below is about HL_7A0S_074

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_28904.1

Basepair signature

cWW-F-F-tWH-cWH-tSH-tHW-F-F-F-F-F

Number of instances in this motif group

1

Unit IDs

4V90|1|BA|G|2744
4V90|1|BA|C|2745
4V90|1|BA|U|2746
4V90|1|BA|G|2747
4V90|1|BA|A|2748
4V90|1|BA|A|2749
4V90|1|BA|A|2750
4V90|1|BA|G|2751
4V90|1|BA|C|2752
4V90|1|BA|A|2753
4V90|1|BA|U|2754
4V90|1|BA|C|2755
4V90|1|BA|U|2756
4V90|1|BA|A|2757
4V90|1|BA|A|2758
4V90|1|BA|G|2759
4V90|1|BA|C|2760

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains

Chain B9

50S RIBOSOMAL PROTEIN L36

Chain BH

50S RIBOSOMAL PROTEIN L6

Chain BN

50S RIBOSOMAL PROTEIN L13