HL_4V92_001

3D structure

PDB id

4V92 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Kluyveromyces lactis 80S ribosome in complex with CrPV-IRES

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GUUGAUCCUGC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V92_001 not in the Motif Atlas

Homologous match to HL_4V88_186

Geometric discrepancy: 0.2129

The information below is about HL_4V88_186

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89881.2

Basepair signature

cWW-tHW-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

4V92|1|A2|G|7
4V92|1|A2|U|8
4V92|1|A2|U|9
4V92|1|A2|G|10
4V92|1|A2|A|11
4V92|1|A2|U|12
4V92|1|A2|C|13
4V92|1|A2|C|14
4V92|1|A2|U|15
4V92|1|A2|G|16
4V92|1|A2|C|17

Current chains

Chain A2

18S RRNA

Nearby chains

Chain AZ

Cripavirus internal ribosome entry site (IRES); CrPV IRES

Chain BC

US5

Chain BX

US12